PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G275600.4
Common NameB456_008G275600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 639aa    MW: 70995 Da    PI: 7.1805
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G275600.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-057798223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        kC +C++ F ++ n++rHir+H
  Gorai.008G275600.4 77 KCDKCSREFCSPINYRRHIRVH 98
                        7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00987698IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.11876103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MPVAKLKAAN SANLMKSEDL NDSLDTFIRQ AIGKEPFLPF SRTGDSPVQW IQLLHALDQQ  60
DIPGWPLLSP LKVQAQKCDK CSREFCSPIN YRRHIRVHHR LKKLDKDSAK NRDLLAAFWD  120
KLSEDEAKEV VSFKDVLLEG VPGSSVIKSL TTHVKRQGFS ALPQVCLRAG SALLDLVQAR  180
PSIFPISSQE LFSILDDASE RTFLCGAAVS MQKYIFDGEA GKIGLETKNL VACTSFLVEQ  240
KLVKEWLADK DAEALRCQKL LVEEEEAAQK RQVELLERKR QKKLRQKEQK AKEQRHWELE  300
ESKPNMDDLL EVNTLAETSS PSAVDSDGQN PLMSTDQIIP SVEPNLFSKL EENVDYEIQT  360
GFSNGYSDPG ISQNIERRTE QVGHRHIVVA RRQTPPNSQR GVLNDFHASQ NSHGFKCGGI  420
NKHGTNRERF APIGNGNKIW SQKPKAVNEG ESLKIRMEKQ AANQLNQNKN HELLIGSISV  480
TLENYSNHDG NNLAEACDRS LAECRIPKNN VQEKSSKLDP VQGVTNRSTI KFWRPVSRHE  540
SKSSSPVQNG ASESEVQVIA EKDGARTSSN ETCLRSCSTD GIDGVVSMDL ISTLKESVQP  600
ESSQFDSHTA KAILAQSKSG CLNDLSNNSI STVLLLPN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283ERKRQKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440133.10.0PREDICTED: uncharacterized protein LOC105765523 isoform X1
TrEMBLA0A0D2RNH70.0A0A0D2RNH7_G
STRINGVIT_16s0050g00700.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-135C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]